/*
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
+ LBP CNRS 7213             http://www-lbp.u-strasbg.fr/                            +
+ Dev by Philippe Carl      philippe.carl@unistra.fr                                +
+ Features                  Macro illustrating the definition of ROIs within the    +
+                           ScatterPlot and composite pictures as well as the macro +
+                           exporting possibilities                                 +
+ Last update               01/02/2021                                              +
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
*/

	run("Blobs (25K)");
	run("Blobs (25K)");
	run("Flip Vertically");
	run("Colocalization Finder", "image_1=blobs.gif image_2=blobs-1.gif scatterplot_size=[_256 x 256_]");
	selectWindow("ScatterPlot");
	makeRectangle(60, 147, 122, 129);
	selectWindow("Composite");
	makePolygon(10,42,32,9,66,31,79,72,69,127,40,142,12,111,6,70);
	nbResults	=		call("Colocalization_Finder.getResultsLinesCount");
	output		= "" +	call("Colocalization_Finder.analyzeByMacro", "true", "true", 2);
	while(nbResults ==	call("Colocalization_Finder.getResultsLinesCount") || output.contains("comparison already running!"))
	{
		wait(10);
		output = "" +	call("Colocalization_Finder.analyzeByMacro", "true", "true", 2);
	}
	print(output);
	makeRotatedRectangle(209, 42, 166, 130, 50);
	nbResults	=		call("Colocalization_Finder.getResultsLinesCount");
	output		= "" +	call("Colocalization_Finder.analyzeByMacro", "true", "true", "2,3");
	while(nbResults ==	call("Colocalization_Finder.getResultsLinesCount") || output.contains("comparison already running!"))
	{
		wait(10);
		output = "" +	call("Colocalization_Finder.analyzeByMacro", "true", "true", "2,3");
	}
	print(output);
	makeRectangle(103, 21, 50, 50);
	nbResults	=		call("Colocalization_Finder.getResultsLinesCount");
	output		= "" +	call("Colocalization_Finder.analyzeByMacro", "true", "true", "2,3-6");
	while(nbResults ==	call("Colocalization_Finder.getResultsLinesCount") || output.contains("comparison already running!"))
	{
		wait(10);
		output = "" +	call("Colocalization_Finder.analyzeByMacro", "true", "true", "2,3-6");
	}
	print(output);
	makeOval(199, 156, 53, 91);
	nbResults	=		call("Colocalization_Finder.getResultsLinesCount");
	output		= "" +	call("Colocalization_Finder.analyzeByMacro", "true", "true", "2,5-7", "|");
	while(nbResults ==	call("Colocalization_Finder.getResultsLinesCount") || output.contains("comparison already running!"))
	{
		wait(10);
		output = "" +	call("Colocalization_Finder.analyzeByMacro", "true", "true", "2,5-7", "|");
	}
	print(output);
	makeOval(16, 155, 147, 86);
	nbResults 	=		call("Colocalization_Finder.getResultsLinesCount");
	output		= "" +	call("Colocalization_Finder.analyzeByMacro", "true", "false");
	while(nbResults ==	call("Colocalization_Finder.getResultsLinesCount") || output.contains("comparison already running!"))
	{
		wait(10);
		output = "" +	call("Colocalization_Finder.analyzeByMacro", "true", "false");
	}
	print(output);